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ContentSnapshots

John Bryant takes a closer look at some of this month's Original Articles

Inhibition of chalcone synthase Expression in Anthers of Raphanus sativus wit...
Background and Aims

Expression of the mitochondrial gene orf138 causes Ogura cytoplasmic male sterility (CMS) in Raphanus sativus, but little is known about the mechanism by which CMS takes place. A preliminary microarray experiment revealed that several nuclear genes concerned with flavonoid biosynthesis were inhibited in the male-sterile phenotype. In particular, a gene for one of the key enzymes for flavonoid biosynthesis, chalcone synthase (CHS), was strongly inhibited. A few reports have suggested that the inhibition of CHS causes nuclear-dependent male sterile expression; however, there do not appear to be any reports elucidating the effect of CHS on CMS expression. In this study, the expression patterns of the early genes in the flavonoid biosynthesis pathway, including CHS, were investigated in normal and male-sterile lines.

In order to determine the aberrant stage for CMS expression, the characteristics of male-sterile anthers are observed using light and transmission electron microscopy for several stages of flower buds. The expression of CHS and the other flavonoid biosynthetic genes in the anthers were compared between normal and male-sterile types using real time RT-PCR.

Among the flavonoid biosynthetic genes analysed, the expression of CHS was strongly inhibited in the later stages of anther development in sterility cytoplasm; accumulation of putative naringenin derivatives was also inhibited.

These results show that flavonoids play an important role in the development of functional pollen, not only in nuclear-dependent male sterility, but also in CMS.

Species' boundaries applied within Christensonella have varied due to the continuous pattern of variation and mosaic distribution of diagnostic characters. The main goals of this study were to revise the species' delimitation and propose a more stable classification for this genus. In order to achieve these aims phylogenetic relationships were inferred using DNA sequence data and cytological diversity within Christensonella was examined based on chromosome counts and heterochromatin patterns. The results presented describe sets of diagnostic morphological characters that can be used for species' identification.

Phylogenetic studies were based on sequence data of nuclear and plastid regions, analysed using maximum parsimony and maximum likelihood criteria. Cytogenetic observations of mitotic cells were conducted using CMA and DAPI fluorochromes.

Six of 21 currently accepted species were recovered. The results also support recognition of the ‘C. pumila’ clade as a single species. Molecular phylogenetic relationships within the ‘C. acicularis–C. madida’ and ‘C. ferdinandiana–C. neowiedii’ species' complexes were not resolved and require further study. Deeper relationships were incongruent between plastid and nuclear trees, but with no strong bootstrap support for either, except for the position of C. vernicosa. Cytogenetic data indicated chromosome numbers of 2n = 36, 38 and 76, and with substantial variation in the presence and location of CMA/DAPI heterochromatin bands.

The recognition of ten species of Christensonella is proposed according to the molecular and cytogenetic patterns observed. In addition, diagnostic morphological characters are presented for each recognized species. Banding patterns and chromosome counts suggest the occurrence of centric fusion/fission events, especially for C. ferdinandiana. The results suggest that 2n = 36 karyotypes evolved from 2n = 38 through descendent dysploidy. Patterns of heterochromatin distribution and other karyotypic data proved to be a valuable source of information to understand evolutionary patterns within Maxillariinae orchids.

Anaerobic or low oxygen conditions occur when maize plants are submerged or subjected to flooding of the soil. Maize survival under low oxygen conditions is largely dependent on metabolic, physiological and morphological adaptation strategies; the regulation mechanisms of which remain unknown. MicroRNAs (miRNAs) play critical roles in the response to adverse biotic or abiotic stresses at the post-transcriptional level. The aim of this study was to understand submergence-responsive miRNAs and their potential roles in submerged maize roots.

A custom µParafloTM microfluidic array containing plant miRNA (miRBase: http://microrna.sanger.ac.uk) probes was used to explore differentially expressed miRNAs. Small RNAs from treated roots were hybridized with the microarray. The targets and their cis-acting elements of small RNA were predicted and analysed by RT-PCR.

Microarray data revealed that the expression levels of 39 miRNAs from nine maize and some other plant miRNA families were significantly altered (P < 0·01). Four expression profiles were identified across different submergence time-points. The zma-miRNA166, zma-miRNA167, zma-miRNA171 and osa-miRNA396-like were induced in the early phase, and their target genes were predicted to encode important transcription factors, including; HD-ZIP, auxin response factor, SCL and the WRKY domain protein. zma-miR159, ath-miR395-like, ptc-miR474-like and osa-miR528-like were reduced at the early submergence phase and induced after 24 h of submergence. The predicted targets for these miRNAs were involved in carbohydrate and energy metabolism, including starch synthase, invertase, malic enzyme and ATPase. In addition, many of the predicted targets were involved in the elimination of reactive oxygen species and acetaldehyde. Overall, most of the targets of induced miRNAs contained the cis-acting element, which is essential for the anaerobic response or hormone induction.

Submergence-responsive miRNAs are involved in the regulation of metabolic, physiological and morphological adaptations of maize roots at the post-transcriptional level.

The aim of this work was the identification and molecular characterization of novel sugar beet (Beta vulgaris) repetitive sequences to unravel the impact of repetitive DNA on size and evolution of Beta genomes via amplification and diversification.

Genomic DNA and a pool of B. vulgaris repetitive sequences were separately used as probes for a screening of high-density filters from a B. vulgaris plasmid library. Novel repetitive motifs were identified by sequencing and further used as probes for Southern analyses in the genus Beta. Chromosomal localization of the repeats was analysed by fluorescent in situ hybridization on chromosomes of B. vulgaris and two other species of the section Beta.

Two dispersed repetitive families pDvul1 and pDvul2 and the tandemly arranged repeat family pRv1 were isolated from a sugar beet plasmid library. The dispersed repetitive families pDvul1 and pDvul2 were identified in all four sections of the genus Beta. The members of the pDvul1 and pDvul2 family are scattered over all B. vulgaris chromosomes, although amplified to a different extent. The pRv1 satellite repeat is exclusively present in species of the section Beta. The centromeric satellite pBV1 by structural variations of the monomer and interspersion of pRv1 units forms complex satellite structures, which are amplified in different degrees on the centromeres of 12 chromosomes of the three species of the Beta section.

The complexity of the pBV1 satellite family observed in the section Beta of the genus Beta and, in particular, the strong amplification of the pBV1/pRv1 satellite in the domesticated B. vulgaris indicates the dynamics of centromeric satellite evolution during species radiation within the genus. The dispersed repeat families pDvul1 and pDvul2 might represent derivatives of transposable elements.

Reproductive assurance, the ability to produce seeds when pollinators or mates are scarce, is thought to be the major advantage of selfing in flowering plants. However, few studies have performed a direct cost–benefit analysis of the selective advantage of selfing, particularly given a long-term perspective among populations or across several flowering seasons within population. This study examined the fertility consequences of autonomous selfing in Roscoea schneideriana (Zingiberaceae), a small perennial Himalayan ginger typically found in habitats at around 3000 m a.s.l.

The floral biology of R. schneideriana was studied in natural populations; the capacity for autonomous selfing was estimated using pollinator exclusion experiments; the timing of selfing was quantified by anther removal at different times during flowering; whether autonomous selfing increases seed production was tested by emasculating flowers; and the magnitude of inbreeding depression was estimated by comparing relative performance of progeny from self- and cross-pollinations. Pollinator observations were also conducted in the natural populations.

The hooked stigmas of most flowers curl towards the anther and can contact pollen grains at an early stage of anthesis. Flowers with potential pollinators excluded set of as many seeds per fruit as hand-selfed and opened flowers. Autonomous selfing mostly occurs within 2 d of anthesis and can increase seed production by an average of 84 % in four populations during the flowering seasons of 2005–2007. Visits by effective pollinators were extremely rare. The cumulative inbreeding depression of R. schneideriana was 0·226.

Autonomous selfing in R. schneideriana is achieved by stigmas curling towards the anthers early in flowering. It is suggested that under the poor pollination conditions, autonomous selfing has been selected for in this alpine ginger because it provides substantial reproductive assurance with very low costs.

The monogeneric Kirkiaceae (Sapindales) were formerly placed as Kirkioideae in Simaroubaceae. However, recent molecular phylogenetic studies indicate that they are not in Simaroubaceae and they appear to be sister to the clade of Anacardiaceae plus Burseraceae. Such affinity was never considered or discussed since the first description of Kirkia. The present study is the first detailed analysis of the floral structure of a representative of Kirkiaceae and the first comparison with other sapindalean families, especially Anacardiaceae and Burseraceae.

Floral structure of Kirkia wilmsii was studied using transversal and longitudinal microtome section series, scanning electron microscopy and light microscopy.

The flowers of Kirkia wilmsii are morphologically bisexual but functionally unisexual. They are polysymmetric, isomerous (tetramerous) and haplostemonous. The ovary is syncarpous and entirely synascidiate. The floral apex forms a hemispherical protrusion on top of the ovary. The styles are free but postgenitally united and apically form a stigmatic head with a compitum. Each carpel is uniovulate (biovulate in a few other species) and ovules are crassinucellar, bitegmic and slightly campylotropous. The micropyle is formed by both integuments and is unusually long. The unusual two radially disposed locules in each carpel in the former genus Pleiokirkia can be explained developmentally by the two offset and tightly contiguous lateral placentae.

Paralleling the molecular results, a suite of floral features supports the position of Kirkiaceae close to the Anacardiaceae–Burseraceae clade, and not in Simaroubaceae.

Experimental evidence in the literature suggests that O2•– produced in the elongation zone of roots and leaves by plasma membrane NADPH oxidase activity is required for growth. This study explores whether growth changes along the root tip induced by hyperosmotic treatments in Zea mays are associated with the distribution of apoplastic O2•–.

Stress treatments were imposed using 150 mm NaCl or 300 mm sorbitol. Root elongation rates and the spatial distribution of growth rates in the root tip were measured. Apoplastic O2•– was determined using nitro blue tetrazolium, and H2O2 was determined using 2', 7'-dichlorofluorescin.

In non-stressed plants, the distribution of accelerating growth and highest O2•– levels coincided along the root tip. Salt and osmotic stress of the same intensity had similar inhibitory effects on root elongation, but O2•– levels increased in sorbitol-treated roots and decreased in NaCl-treated roots.

The lack of association between apoplastic O2•– levels and root growth inhibition under hyper-osmotic stress leads us to hypothesize that under those conditions the role of apoplastic O2•– may be to participate in signalling processes, that convey information on the nature of the substrate that the growing root is exploring.

Accurately representing development is essential for applying crop simulations to investigate the effects of climate, genotypes or crop management. Development in wheat (Triticum aestivum, T. durum) is primarily driven by temperature, but affected by vernalization and photoperiod, and is often simulated by reducing thermal-time accumulation using vernalization or photoperiod factors or limiting accumulation when a lower optimum temperature (Toptl) is exceeded. In this study Toptl and methods for representing effects of vernalization and photoperiod on anthesis were examined using a range of planting dates and genotypes.

An examination was made of Toptl values of 15, 20, 25 and 50 °C, and either the most limiting or the multiplicative value of the vernalization and photoperiod development rate factors for simulating anthesis. Field data were from replicated trials at Ludhiana, Punjab, India with July through to December planting dates and seven cultivars varying in vernalization response.

Simulations of anthesis were similar for Toptl values of 20, 25 and 50 °C, but a Toptl of 15 °C resulted in a consistent bias towards predicting anthesis late for early planting dates. Results for Toptl above 15 °C may have occurred because mean temperatures rarely exceeded 20 °C before anthesis for many planting dates. For cultivars having a strong vernalization response, anthesis was more accurately simulated when vernalization and photoperiod factors were multiplied rather than using the most limiting of the two factors.

Setting Toptl to a high value (30 °C) and multiplying the vernalization and photoperiod factors resulted in accurately simulating anthesis for a wide range of planting dates and genotypes. However, for environments where average temperatures exceed 20 °C for much of the pre-anthesis period, a lower Toptl (23 °C) might be appropriate. These results highlight the value of testing a model over a wide range of environments.

Wind erosion is a severe stress for plants in drylands, but the mechanisms by which plants withstand erosion remain largely unknown. Here, the hypothesis is tested that maintaining rhizome connections helps plants to tolerate erosion.

Five transects were established across an inland dune in Inner Mongolia, China, and measurements were made of leaf number, biomass per ramet and rhizome depth of Psammochloa villosa in 45 plots. In 40 x 40 cm plots of P. villosa on another dune, the top 15 or 30 cm of sand was removed for 1·5 or 3 months to simulate short- and long-term moderate and severe erosion, respectively, with untreated plots as controls, and the rhizomes at the edges of half of the plots were severed to mimic loss of rhizome connections.

Leaf number and biomass per ramet showed quadric relationships with rhizome depth; when rhizomes were exposed to the air, the associated ramets either died or became very weak. Ramet number, leaf number and biomass per plot decreased with increasing erosion severity. Rhizome connections did not affect these traits under control or short-term erosion, but increased them under long-term erosion.

Rhizome connections alleviated the negative effects of erosion on P. villosa, very likely because the erosion-stressed ramets received water and/or photosynthates translocated from those connected ramets that were not subject to erosion. This study provides the first evidence that maintaining rhizome connections helps plants to tolerate erosion in drylands.

French wheat grains may be of little value on world markets because they have low and highly variable grain protein concentrations (GPC). This nitrogen-yield to yield ratio depends on crop nitrogen (N) fertilization as well as on crop capacity to use N, which is known to vary with climate and disease severity. Here an examination is made of the respective roles that N remobilization and post-anthesis N uptake play in N yield variations; in particular, when wheat crops (Triticum aestivum) are affected by leaf rust (Puccinia triticina) and Septoria tritici blotch (teleomorph Mycosphaerella graminicola).

Data from a 4-year field experiment was used to analyse N yield variations in wheat crops grown either with a third or no late N fertilization. Natural aerial epidemics ensured a range of disease severity, and fungicide ensured disease-free control plots. The data set of Gooding et al. (2005, Journal of Agricultural Science 143: 503–518) was incorporated in order to enlarge the range of conditions.

Post-anthesis N uptake accounted for a third of N yield whilst N remobilization accounted for two-thirds in all crops whether affected by diseases or not. However, variations in N yield were highly correlated with post-anthesis N uptake, more than with N remobilization, in diseased and also healthy crops. Furthermore, N remobilization did not significantly correlate with N yield in healthy crops. These findings matched data from studies using various wheat genotypes under various management and climatic conditions. Leaf area duration (LAD) accurately predicted N remobilization whether or not crops were diseased; in diseased crops, LAD also accurately predicted N uptake.

Under the experimental conditions, N yield variations were closely associated with post-anthesis N uptake in diseased but also in healthy crops. Understanding the respective roles of N uptake and N remobilization in the case of diseased and healthy crops holds the promise of better modelling of variations in N yield, and thus in GPC.

Consistent abiotic factors can affect directional selection; cyclones are abiotic phenomena with near-discrete geographic limits. The current study investigates selective pressure of cyclones on plants at the species level, testing for possible natural selection.

New World Arecaceae (palms) are used as a model system, as plants with monopodial, unbranched arborescent form are most directly affected by the selective pressure of wind load. Living specimens of known provenance grown at a common site were affected by the same cyclone. Data on percentage mortality were compiled and analysed in biogeographic and phylogenetic contexts.

Palms of cyclone-prone provenance exhibited a much lower (one order of magnitude) range in cyclone tolerance, and significantly lower (P < 0·001) mean percentage mortality than collections from cyclone-free areas. Palms of cyclone-free provenance had much greater variation in tolerance, and significantly greater mean percentage mortality. A test for serial independence recovered no significant phylogenetic autocorrelation of percentage mortality.

Variation in cyclone tolerance in New World Arecaceae correlates with biogeography, and is not confounded with phylogeny. These results suggest natural selection of cyclone tolerance in cyclone-prone areas.

It is well known that genome size differs among species. However, information on the variation and dynamics of genome size in wild populations and on the early phase of genome size divergence between taxa is currently lacking. Genome size dynamics, heritability and phenotype effects are analysed here in a wild population of Festuca pallens (Poaceae).

Genome size was measured using flow cytometry with DAPI dye in 562 seedlings from 17 maternal plants varying in genome size. The repeatability of genome size measurements was verified at different seasons through the use of different standards and with propidium iodide dye; the range of variation observed was tested via analysis of double-peaks. Additionally, chromosome counts were made in selected seedlings.

Analysis of double-peaks showed that genome size varied up to 1·188-fold within all 562 seedlings, 1·119-fold within the progeny of a single maternal plant and 1·117-fold in seedlings from grains of a single inflorescence. Generally, genome sizes of seedlings and their mothers were highly correlated. However, in maternal plants with both larger and smaller genomes, genome sizes of seedlings were shifted towards the population median. This was probably due to the frequency of available paternal genomes (pollen grains) in the population. There was a stabilizing selection on genome size during the development of seedlings into adults, which may be important for stabilizing genome size within species. Furthermore, a positive correlation was found between genome size and the development rate of seedlings. A larger genome may therefore provide a competitive advantage, perhaps explaining the higher proportion of plants with larger genomes in the population studied. The reason for the observed variation may be the recent induction of genome size variation, e.g. by activity of retrotransposons, which may be preserved in the long term by the segregation of homeologous chromosomes of different sizes during gametogenesis.

Changes in root-zone Ca2+ concentration affect a plant's performance under high salinity, an issue poorly investigated for Mediterranean xerophytes, which may suffer from transient root-zone salinity stress in calcareous soils. It was hypothesized that high-Ca2+ supply may affect differentially the response to salinity stress of species differing in their strategy of Na+ allocation at organ level. Phillyrea latifolia and Pistacia lentiscus, which have been reported to greatly differ for Na+ uptake and transport rates to the leaves, were studied.

In plants exposed to 0 mm or 200 mm NaCl and supplied with 2·0 mm or 8·0 mm Ca2+, under 100 % solar irradiance, measurements were conducted of (a) gas exchange, PSII photochemistry and plant growth; (b) water and ionic relations; (c) the activity of superoxide dismutase and the lipid peroxidation; and (d) the concentration of individual polyphenols. Gas exchange and plant growth were also estimated during a period of relief from salinity stress.

The performance of Pistacia lentiscus decreased to a significantly smaller degree than that of Phillyrea latifolia because of high salinity. Ameliorative effects of high-Ca2+ supply were more evident in Phillyrea latifolia than in Pistacia lentiscus. High-Ca2+ reduced steeply the Na+ transport to the leaves in salt-treated Phillyrea latifolia, and allowed a faster recovery of gas exchange and growth rates as compared with low-Ca2+ plants, during the period of relief from salinity. Salt-induced biochemical adjustments, mostly devoted to counter salt-induced oxidative damage, were greater in Phillyrea latifolia than in Pistacia lentiscus.

An increased Ca2+ : Na+ ratio may be of greater benefit for Phillyrea latifolia than for Pistacia lentiscus, as in the former, adaptive mechanisms to high root-zone salinity are primarily devoted to restrict the accumulation of potentially toxic ions in sensitive shoot organs.